42 lines
No EOL
1.3 KiB
Python
42 lines
No EOL
1.3 KiB
Python
'''
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conda deactivate
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conda create -y -n greedy -c conda-forge python
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conda activate greedy
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cmake -DCMAKE_INSTALL_PREFIX=/home/xfr/.conda/envs/greedy ..
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greedy -d 3 -i \
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"/mnt/1218/Public/dataset2/M6/ZYRGTRKJ/20230728/CT/1.1_CyberKnife_head(MAR)_20230728111920_3.nii.gz" \
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"/mnt/1218/Public/dataset2/M6/ZYRGTRKJ/20230728/MR/3D_SAG_T1_MPRAGE_+C_MPR_Tra_20230728143005_14.nii.gz" \
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-o test \
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-m MI \
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time greedy -d 3 -a \
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-m MI \
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-i \
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"/mnt/1218/Public/dataset2/M6/ZYRGTRKJ/20230728/CT/1.1_CyberKnife_head(MAR)_20230728111920_3.nii.gz" \
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"/mnt/1218/Public/dataset2/M6/ZYRGTRKJ/20230728/MR/3D_SAG_T1_MPRAGE_+C_MPR_Tra_20230728143005_14.nii.gz" \
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-o affine.mat \
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-dof 6 \
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-ia-image-centers -n 100x50x10
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time greedy -d 3 \
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-m MI \
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-i \
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"/mnt/1218/Public/dataset2/M6/ZYRGTRKJ/20230728/CT/1.1_CyberKnife_head(MAR)_20230728111920_3.nii.gz" \
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"/mnt/1218/Public/dataset2/M6/ZYRGTRKJ/20230728/MR/3D_SAG_T1_MPRAGE_+C_MPR_Tra_20230728143005_14.nii.gz" \
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-it affine.mat \
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-o warp.nii.gz \
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-oinv inverse_warp.nii.gz \
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-sv -n 100x50x10
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greedy -d 3 \
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-rf "/mnt/1218/Public/dataset2/M6/ZYRGTRKJ/20230728/CT/1.1_CyberKnife_head(MAR)_20230728111920_3.nii.gz" \
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-rm "/mnt/1218/Public/dataset2/M6/ZYRGTRKJ/20230728/MR/3D_SAG_T1_MPRAGE_+C_MPR_Tra_20230728143005_14.nii.gz" resliced.nii.gz \
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-r warp.nii.gz affine.mat
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''' |