'''
conda deactivate
conda create -y -n greedy -c conda-forge python
conda activate greedy

cmake -DCMAKE_INSTALL_PREFIX=/home/xfr/.conda/envs/greedy ..


greedy -d 3 -i \
"/mnt/1218/Public/dataset2/M6/ZYRGTRKJ/20230728/CT/1.1_CyberKnife_head(MAR)_20230728111920_3.nii.gz" \
"/mnt/1218/Public/dataset2/M6/ZYRGTRKJ/20230728/MR/3D_SAG_T1_MPRAGE_+C_MPR_Tra_20230728143005_14.nii.gz" \
-o test \
-m MI \


time greedy -d 3 -a \
    -m MI \
    -i \
    "/mnt/1218/Public/dataset2/M6/ZYRGTRKJ/20230728/CT/1.1_CyberKnife_head(MAR)_20230728111920_3.nii.gz" \
    "/mnt/1218/Public/dataset2/M6/ZYRGTRKJ/20230728/MR/3D_SAG_T1_MPRAGE_+C_MPR_Tra_20230728143005_14.nii.gz" \
    -o affine.mat \
    -dof 6 \
    -ia-image-centers -n 100x50x10


time greedy -d 3 \
    -m MI \
    -i \
    "/mnt/1218/Public/dataset2/M6/ZYRGTRKJ/20230728/CT/1.1_CyberKnife_head(MAR)_20230728111920_3.nii.gz" \
    "/mnt/1218/Public/dataset2/M6/ZYRGTRKJ/20230728/MR/3D_SAG_T1_MPRAGE_+C_MPR_Tra_20230728143005_14.nii.gz" \
    -it affine.mat \
    -o warp.nii.gz \
    -oinv inverse_warp.nii.gz \
    -sv -n 100x50x10    

greedy -d 3 \
  -rf "/mnt/1218/Public/dataset2/M6/ZYRGTRKJ/20230728/CT/1.1_CyberKnife_head(MAR)_20230728111920_3.nii.gz" \
  -rm "/mnt/1218/Public/dataset2/M6/ZYRGTRKJ/20230728/MR/3D_SAG_T1_MPRAGE_+C_MPR_Tra_20230728143005_14.nii.gz" resliced.nii.gz \
  -r warp.nii.gz affine.mat    


'''