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Furen Xiao 77653e4018 refactor(impact): replace KonfAI pip runtime with Docker elastix_impact image 
Migrate register_impact from impact-reg-konfai (pip + one-time glibc/LibTorch
shim) to the vboussot/elastix_impact Docker image running a rigid 6-DOF
EulerTransform with MIND + TotalSegmentator static features and a Mattes-MI
secondary metric. Delete scripts/setup_impact_konfai.sh.

Vendor ImpactLoss (vboussot/ImpactLoss) into src/impact_loss.py and add
impact_loss as a per-case semantic scoring metric in the benchmark runner.

Update docs (AGENTS.md, REGISTRATION_BENCHMARK.md) to reflect the
all-rigid pipeline set and the new Docker-based IMPACT runtime.
2026-09-30 21:23:18 +08:00
..
01_build_ntuh_manifest.py feat: refactor path handling and add configuration for external data directories 2026-09-27 10:17:33 +08:00
02_build_m6_dataset.py Enhance registration pipelines with CT clipping and NiftyReg Docker support 2026-09-29 17:31:24 +08:00
03_scan_lee_t1c.py fix(t1c): exclude TOF MRA and subtraction series 2026-09-27 18:45:09 +08:00
04_reconstruct_lee.py fix(lee): exclude SSFP sequences and enhance T1c exclusion notes 2026-09-27 15:29:02 +08:00
05_build_splits.py feat: refactor path handling and add configuration for external data directories 2026-09-27 10:17:33 +08:00
06_pseudo_label.py feat: refactor path handling and add configuration for external data directories 2026-09-27 10:17:33 +08:00
07_train.py feat: initial project structure 2026-09-25 16:00:37 +08:00
08_eval.py feat: initial project structure 2026-09-25 16:00:37 +08:00
09_run_iterative.py feat: refactor path handling and add configuration for external data directories 2026-09-27 10:17:33 +08:00
bench_registration.py refactor(impact): replace KonfAI pip runtime with Docker elastix_impact image 2026-09-30 21:23:18 +08:00
benchmark_pipelines.py fix(docs): update conda environment name to longitudinal-313 and Python version to 3.13 2026-09-28 21:01:45 +08:00
make_screenshots.py feat: refactor path handling and add configuration for external data directories 2026-09-27 10:17:33 +08:00
preprocess.py feat(registration): align CT to T1c and add benchmarking 2026-09-28 16:20:30 +08:00
scan_procs.py feat: refactor path handling and add configuration for external data directories 2026-09-27 10:17:33 +08:00
test_dataloader.py feat: refactor path handling and add configuration for external data directories 2026-09-27 10:17:33 +08:00