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Furen Xiao f80f22dabe feat(pipelines): add SynthMorph Docker registration and drop DeepReg 
Replace the unavailable DeepReg benchmark path with the freesurfer/synthmorph
Docker pipeline for rigid CT-to-T1c registration. Add a shared CT head-box
resample helper for centered initialization and update benchmark docs and CLI
for the new SynthMorph options.
2026-09-28 23:13:44 +08:00
..
01_build_ntuh_manifest.py feat: refactor path handling and add configuration for external data directories 2026-09-27 10:17:33 +08:00
02_build_m6_dataset.py feat(registration): align CT to T1c and add benchmarking 2026-09-28 16:20:30 +08:00
03_scan_lee_t1c.py fix(t1c): exclude TOF MRA and subtraction series 2026-09-27 18:45:09 +08:00
04_reconstruct_lee.py fix(lee): exclude SSFP sequences and enhance T1c exclusion notes 2026-09-27 15:29:02 +08:00
05_build_splits.py feat: refactor path handling and add configuration for external data directories 2026-09-27 10:17:33 +08:00
06_pseudo_label.py feat: refactor path handling and add configuration for external data directories 2026-09-27 10:17:33 +08:00
07_train.py feat: initial project structure 2026-09-25 16:00:37 +08:00
08_eval.py feat: initial project structure 2026-09-25 16:00:37 +08:00
09_run_iterative.py feat: refactor path handling and add configuration for external data directories 2026-09-27 10:17:33 +08:00
bench_registration.py feat(pipelines): add SynthMorph Docker registration and drop DeepReg 2026-09-28 23:13:44 +08:00
benchmark_pipelines.py fix(docs): update conda environment name to longitudinal-313 and Python version to 3.13 2026-09-28 21:01:45 +08:00
make_screenshots.py feat: refactor path handling and add configuration for external data directories 2026-09-27 10:17:33 +08:00
preprocess.py feat(registration): align CT to T1c and add benchmarking 2026-09-28 16:20:30 +08:00
scan_procs.py feat: refactor path handling and add configuration for external data directories 2026-09-27 10:17:33 +08:00
test_dataloader.py feat: refactor path handling and add configuration for external data directories 2026-09-27 10:17:33 +08:00