longitudinal/scripts_nnu/07_train.py

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1.3 KiB
Python

"""Train the nnU-Net model for one pseudo-labeling round.
Epochs / initial lr / warm-start checkpoint are passed to NTUHLPLTrainer via
NNU_PL_* env vars (see scripts_nnu/trainers/ntuh_pl_trainer.py).
Usage:
nnUNetv2_train wrapper: python scripts_nnu/07_train.py \
--gpus 3 --epochs 250 --lr 1e-2 [--warmstart runs_nnu/round0/best_nnu.pth]
"""
import argparse
import os
import sys
sys.path.insert(0, os.path.dirname(os.path.abspath(__file__)))
sys.path.insert(0, os.path.dirname(os.path.dirname(os.path.abspath(__file__))))
from nnu_common import run, nnu_env, train_cmd, best_ckpt
def main():
ap = argparse.ArgumentParser()
ap.add_argument("--gpus", type=int, default=3)
ap.add_argument("--epochs", type=int, default=250)
ap.add_argument("--lr", type=float, default=1e-2)
ap.add_argument("--warmstart", default=None, help="checkpoint for full-weight warm start")
ap.add_argument("--log", default=None)
args = ap.parse_args()
log = args.log or os.path.join(os.path.dirname(os.path.dirname(os.path.abspath(__file__))), "logs", "nnu_train.log")
run(train_cmd(args.gpus), log, env=nnu_env(epoch=args.epochs, lr=args.lr, warmstart=args.warmstart))
print(f"[nnu:train] done; best checkpoint at {best_ckpt()}", flush=True)
if __name__ == "__main__":
main()