Update M6 manifest building to register T1c to CT with rigid
Mattes MI on a CT-space head box, including multi-start initial
tilts for large inter-session head motion. The inverse transform
warps CT and GTV into T1c native space, with acceptance based on
concentricity of the warped CT skull ring and MR head silhouette.
Rerun preprocessing when a row has a label but the warped label file
is missing. Normalize volume orientation in read_nii_img.
Add registration benchmark documentation, benchmark script, and
shared registration pipeline helpers.
- Updated regex patterns for improved matching of series names and tags.
- Added functionality to reject non-head series based on study and series descriptions.
- Implemented max voxel spacing check to filter out series with excessive spacing.
- Enhanced the reconstruction script to handle dynamic-frame series exclusions and artifact pruning.
- Modified output paths for reconstructed NIfTI files and added QA screenshot generation.
- Improved argument parsing in benchmark and pseudo-labeling scripts for better flexibility.
- Introduced a new script for generating QA screenshots from reconstructed volumes.
