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now save 3 dicom tag files in each series

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This commit is contained in:
Furen 2025-06-09 22:37:04 +08:00
parent 283748aa78
commit ad2d52ff9d
4 changed files with 29 additions and 7 deletions
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1
.gitignore vendored
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@ -166,3 +166,4 @@ cython_debug/
*.xlsx *.xlsx
*.local.txt *.local.txt
*.nii.gz *.nii.gz
*.tar

3
src/icu-ventricle.py
View file

@ -10,10 +10,11 @@ import pacs
EXCLUDE = { EXCLUDE = {
'5228932', '5228932',
'2911015',
} }
def get_pacs(series, outdir, max_patients=20): def get_pacs(series, outdir, max_patients=30):
app, window = pacs.login() app, window = pacs.login()
num_patients = 0 num_patients = 0
for index, row in series.iterrows(): for index, row in series.iterrows():

13
src/pacs.py
View file

@ -23,6 +23,7 @@ def mouse_click(ws):
time.sleep(0.1) time.sleep(0.1)
# mouse.press(coords=coords) # mouse.press(coords=coords)
# mouse.release(coords=coords) # mouse.release(coords=coords)
return coords
def login(id=USER_ID, pw=PASSWORD): def login(id=USER_ID, pw=PASSWORD):
# Timings.fast() # Timings.fast()
@ -180,11 +181,21 @@ def save_study(chartno, outdir, only_tag):
time.sleep(.1) time.sleep(.1)
p = save_tag(window, outdir) p = save_tag(window, outdir)
mouse_click(c)
keyboard.send_keys('^{RIGHT}')
time.sleep(.1)
p = save_tag(window, outdir)
mouse_click(c) mouse_click(c)
keyboard.send_keys('^{END}') keyboard.send_keys('^{END}')
time.sleep(.1) time.sleep(.1)
p = save_tag(window, outdir) p = save_tag(window, outdir)
# mouse_click(c)
# keyboard.send_keys('^{LEFT}')
# time.sleep(.1)
# p = save_tag(window, outdir)
# mouse_click(c) # mouse_click(c)
# keyboard.send_keys('^{HOME}') # keyboard.send_keys('^{HOME}')
# time.sleep(1) # time.sleep(1)
@ -373,7 +384,7 @@ def main():
# save_patient('2380784', r'T:\3\2380784', query=False) # save_patient('2380784', r'T:\3\2380784', query=False)
# save_study('2380784', outdir=r'T:\0\2380784') # save_study('2380784', outdir=r'T:\0\2380784')
# save_patient('6631848', r'T:\0\6631848', query='MR') # save_patient('6631848', r'T:\0\6631848', query='MR')
save_patient('6166521', r'T:\0\6166521', query='CT,MR') save_patient('5530663', r'T:\0\5530663', query='CT,MR')

17
src/uni2nii.py
View file

@ -110,11 +110,15 @@ class Series:
norm1, size1 = value norm1, size1 = value
# print(size1) # print(size1)
# print(self.jpgs.keys()) # print(self.jpgs.keys())
# k, v = sorted(self.jpgs.items(), key=lambda item: -len(item[1]))[0] # k, v = sorted(self.jpgs.items(), key=lambda item: -len(item[1]))[0]
# print(k) # print(k)
# if size1 not in self.jpgs:
# print(size1, "not in", self.jpgs)
# return
v = self.jpgs[size1] v = self.jpgs[size1]
fileNames = [] fileNames = []
for ins in sorted(v.keys()): for ins in sorted(v.keys()):
@ -321,6 +325,11 @@ class Series:
size1 = int(self.headers[a]["Columns"]),int(self.headers[a]["Rows"]) size1 = int(self.headers[a]["Columns"]),int(self.headers[a]["Rows"])
size2 = int(self.headers[b]["Columns"]),int(self.headers[b]["Rows"]) size2 = int(self.headers[b]["Columns"]),int(self.headers[b]["Rows"])
if size1 != size2: if size1 != size2:
print(size1, "!=", size2)
continue
if size1 not in self.jpgs:
print(size1, "not in", self.jpgs.keys())
continue continue
o1 = np.array([float(o) for o in self.headers[a]["Image Orientation (Patient)"].split('\\')]) o1 = np.array([float(o) for o in self.headers[a]["Image Orientation (Patient)"].split('\\')])
@ -463,14 +472,14 @@ def main():
# s = Study(r'T:\0\6166521\20250513_MR_2316') # s = Study(r'T:\0\6166521\20250513_MR_2316')
# s = Study(r'T:\0\6166521\20220330_MR_1690') # s = Study(r'T:\0\6166521\20220330_MR_1690')
# s = Study(r'T:\0\6166521\20210625_MR_693') # s = Study(r'T:\0\6166521\20210625_MR_693')
# s = Study(r'T:\0\6166521\20231117_MR_1983') # s = Study(r'T:\0\2508411\20200226_CT_894')
# s.write('0/') # s.write('0/')
# exit() # exit()
for e in os.scandir(r'T:\0\6166521'): for e in os.scandir(r'T:\0\6041550'):
if e.is_dir(): if e.is_dir():
indir = e.path indir = e.path
outdir = os.path.join('0/', e.name) outdir = os.path.join(r'T:\1\6041550', e.name)
print(indir) print(indir)
# continue # continue
s = Study(indir) s = Study(indir)