now save 3 dicom tag files in each series

.gitignore

@@ -165,4 +165,5 @@ cython_debug/
 # xfr
 *.xlsx
 *.local.txt
-*.nii.gz
+*.nii.gz
+*.tar

src/icu-ventricle.py

@@ -10,10 +10,11 @@ import pacs
 
 EXCLUDE = {
     '5228932',
+    '2911015',
 }
 
 
-def get_pacs(series, outdir, max_patients=20):
+def get_pacs(series, outdir, max_patients=30):
     app, window = pacs.login()
     num_patients = 0
     for index, row in series.iterrows():

src/pacs.py

@@ -23,6 +23,7 @@ def mouse_click(ws):
     time.sleep(0.1)
     # mouse.press(coords=coords)
     # mouse.release(coords=coords)
+    return coords
 
 def login(id=USER_ID, pw=PASSWORD):
     # Timings.fast()
@@ -180,11 +181,21 @@ def save_study(chartno, outdir, only_tag):
         time.sleep(.1)
         p = save_tag(window, outdir)
 
+        mouse_click(c)
+        keyboard.send_keys('^{RIGHT}')
+        time.sleep(.1)
+        p = save_tag(window, outdir)
+
         mouse_click(c)
         keyboard.send_keys('^{END}')
         time.sleep(.1)
         p = save_tag(window, outdir)
 
+        # mouse_click(c)
+        # keyboard.send_keys('^{LEFT}')
+        # time.sleep(.1)
+        # p = save_tag(window, outdir)
+
         # mouse_click(c)
         # keyboard.send_keys('^{HOME}')
         # time.sleep(1)
@@ -373,7 +384,7 @@ def main():
     # save_patient('2380784', r'T:\3\2380784', query=False)
     # save_study('2380784', outdir=r'T:\0\2380784')
     # save_patient('6631848', r'T:\0\6631848', query='MR')
-    save_patient('6166521', r'T:\0\6166521', query='CT,MR')
+    save_patient('5530663', r'T:\0\5530663', query='CT,MR')
 
 
 

src/uni2nii.py

@@ -110,11 +110,15 @@ class Series:
         norm1, size1 = value
 
         # print(size1)
-
         # print(self.jpgs.keys())
+
         # k, v = sorted(self.jpgs.items(), key=lambda item: -len(item[1]))[0]
         # print(k)
 
+        # if size1 not in self.jpgs:
+        #     print(size1, "not in", self.jpgs)
+        #     return 
+
         v = self.jpgs[size1]
         fileNames = []
         for ins in sorted(v.keys()):
@@ -321,6 +325,11 @@ class Series:
                 size1 = int(self.headers[a]["Columns"]),int(self.headers[a]["Rows"])
                 size2 = int(self.headers[b]["Columns"]),int(self.headers[b]["Rows"])
                 if size1 != size2:
+                    print(size1, "!=", size2)
+                    continue
+
+                if size1 not in self.jpgs:
+                    print(size1, "not in", self.jpgs.keys())
                     continue
 
                 o1 = np.array([float(o) for o in self.headers[a]["Image Orientation (Patient)"].split('\\')])
@@ -463,14 +472,14 @@ def main():
     # s = Study(r'T:\0\6166521\20250513_MR_2316')
     # s = Study(r'T:\0\6166521\20220330_MR_1690')
     # s = Study(r'T:\0\6166521\20210625_MR_693')
-    # s = Study(r'T:\0\6166521\20231117_MR_1983')
+    # s = Study(r'T:\0\2508411\20200226_CT_894')
     # s.write('0/')
     # exit()
 
-    for e in os.scandir(r'T:\0\6166521'):
+    for e in os.scandir(r'T:\0\6041550'):
         if e.is_dir():
             indir = e.path
-            outdir = os.path.join('0/', e.name)
+            outdir = os.path.join(r'T:\1\6041550', e.name)
             print(indir)
             # continue
             s = Study(indir)