from rt_utils import RTStructBuilder import matplotlib.pyplot as plt # Load existing RT Struct. Requires the series path and existing RT Struct path dicom_series_path = "/nn/6768700/20230106/CT/9/" rt_struct_list = [ "/nn/6768700/20230106/CT/9-rtss.dcm", "/nn/6768700/20230106/CT/DCM_1.2.840.114358.189250942524258.20230106112102.643186932766_230109075302/rtss~3~a2381ecc-4b94-40cc-a7aa-41968c54e206.dcm", ] rtstruct = RTStructBuilder.create_new(dicom_series_path=dicom_series_path) for rt_struct_path in rt_struct_list: r = RTStructBuilder.create_from( dicom_series_path=dicom_series_path, rt_struct_path=rt_struct_path, ) for name in r.get_roi_names(): mask_3d = r.get_roi_mask_by_name(name) rtstruct.add_roi( mask=mask_3d, name=name, ) print(name) rtstruct.save('/nn/6768700/20230106/CT/new-rt-struct.dcm') exit() #Large rtstruct1 = RTStructBuilder.create_from( dicom_series_path="/nn/6768700/20230106/CT/9/", rt_struct_path="/nn/6768700/20230106/CT/9-rtss.dcm" ) #Small rtstruct2 = RTStructBuilder.create_from( dicom_series_path="/nn/6768700/20230106/CT/9/", rt_struct_path="/nn/6768700/20230106/CT/DCM_1.2.840.114358.189250942524258.20230106112102.643186932766_230109075302/rtss~3~a2381ecc-4b94-40cc-a7aa-41968c54e206.dcm" ) # print(dir(rtstruct2)) for name in rtstruct2.get_roi_names(): mask_3d = rtstruct2.get_roi_mask_by_name(name) rtstruct1.add_roi( mask=mask_3d, name=name, ) print(name)